In developing the Worm Coolkit we built upon the excellent work of others in the community, who created and share valuable resources. In particular, we would like to acknowledge the following databases upon from which we draw information:
Nature Protocols 2009; 4(1):44 & Nucleic Acids Res. 2009;37(1):1
Genetics. 2018 Oct;210(2):445-461. doi: 10.1534/genetics.118.301307.
National Center for Biotechnology Information (NCBI)[Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Biotechnology Information; [1988] – [cited 2020 June 01]. Available from: https://www.ncbi.nlm.nih.gov/
WormBase: a modern Model Organism Information Resource. Todd W Harris, Valerio Arnaboldi, Scott Cain, Juancarlos Chan, Wen J Chen, Jaehyoung Cho, Paul Davis, Sibyl Gao, Christian A Grove, Ranjana Kishore, Raymond Y N Lee, Hans-Michael Muller, Cecilia Nakamura, Paulo Nuin, Michael Paulini, Daniela Raciti, Faye H Rodgers, Matthew Russell, Gary Schindelman, Kimberly V Auken, Qinghua Wang, Gary Williams, Adam J Wright, Karen Yook, Kevin L Howe, Tim Schedl, Lincoln Stein, Paul W Sternberg, WormBase: a modern Model Organism Information Resource, Nucleic Acids Research, Volume 48, Issue D1, 08 January 2020, Pages D762–D767, https://doi.org/10.1093/nar/gkz920 .
UniProt: a worldwide hub of protein knowledge, Nucleic Acids Res. 47: D506-515 (2019)
Thompson, Owen & Edgley, Mark & Strasbourger, Pnina & Flibotte, Stephane & Ewing, Brent & Adair, Ryan & Au, Vinci & Chaudry, Iasha & Fernando, Lisa & Hutter, Harald & Kieffer, Armelle & Lau, Joanne & Lee, Norris & Miller, Angela & Raymant, Greta & Shen, Bin & Shendure, Jay & Taylor, Jon & Turner, Emily & Waterston, Robert. (2013). The Million Mutation Project: A new approach to genetics in Caenorhabditis elegans.. Genome research. 23. 10.1101/gr.157651.113.
Andrew D Yates, Premanand Achuthan, Wasiu Akanni, James Allen, Jamie Allen, Jorge Alvarez-Jarreta, M Ridwan Amode, Irina M Armean, Andrey G Azov, Ruth Bennett, Jyothish Bhai, Konstantinos Billis, Sanjay Boddu, José Carlos Marugán, Carla Cummins, Claire Davidson, Kamalkumar Dodiya, Reham Fatima, Astrid Gall, Carlos Garcia Giro´n, Laurent Gil, Tiago Grego, Leanne Haggerty, Erin Haskell, Thibaut Hourlier, Osagie G Izuogu, Sophie H Janacek, Thomas Juettemann, Mike Kay, Ilias Lavidas, Tuan Le, Diana Lemos, Jose Gonzalez Martinez, Thomas Maurel, Mark McDowall, Aoife McMahon, Shamika Mohanan, Benjamin Moore, Michael Nuhn, Denye N Oheh, Anne Parker, Andrew Parton, Mateus Patricio, Manoj Pandian Sakthivel, Ahamed Imran Abdul Salam, Bianca M Schmitt, Helen Schuilenburg, Dan Sheppard, Mira Sycheva, Marek Szuba, Kieron Taylor, Anja Thormann, Glen Threadgold, Alessandro Vullo, Brandon Walts, Andrea Winterbottom, Amonida Zadissa, Marc Chakiachvili, Bethany Flint, Adam Frankish, Sarah E Hunt, Garth IIsley, Myrto Kostadima, Nick Langridge, Jane E Loveland, Fergal J Martin, Joannella Morales, Jonathan M Mudge, Matthieu Muffato, Emily Perry, Magali Ruffier, Stephen J Trevanion, Fiona Cunningham, Kevin L Howe, Daniel R Zerbino, Paul Flicek. Ensembl 2020. PubMed PMID: 31691826. doi:10.1093/nar/gkz966
For the usage of their list of Recognition Specificities (Restriction enzymes)
IDT Integrated DNA Technologies
For the usage of their tool of CRISPR-Cas9 guide RNA design checker